Assessment of the biodegradability of a monosulfonated azo dye and aromatic amines

Biodecolourisation of an azo dye by anaerobic cultures using a liposomal textile levelling agent as primary substrate was assessed. Liposomes seem to facilitate the uptake of the dye (Acid Orange 7) by anaerobic biomass, leading to a fast decolourisation (colour removal of 96% was achieved in the first sample port of the reactor profiles). On the other hand, the presence of dye (60–300 mg l⁻¹) caused a decrease in the chemical oxygen demand (COD) degradation rate (4.1–2.5 g COD removed l⁻¹ d⁻¹ for 60 and 300 mg l⁻¹ of dye, respectively), suggesting inhibitory effects.Aerobic degradation of aromatic amines was investigated in aerobic respirometric assays with different types of inocula. Sulfanilic acid and aniline were mineralised by inocula with a significant microbiological diversity, even with domestic effluent. These results were confirmed by a significant reduction of COD, total organic carbon (TOC) and a high oxygen consumption (biochemical oxygen demand/theoretical oxygen demand), 92±4%. Kinetic analysis showed that a sigmoid function describes quite well the experimental data, even better than the exponential model. Orthanilic and metanilic acids and 1-amino-2-naphtol were persistent under the tested conditions.     

Production and degradation of geosmin in a stratified lake with anaerobic hypolimnion (Schleinsee)

Abstract Depth profiles of geosmin concentrations were determined over the year in a stratified lake with anaerobic hypolimnion. Two independent sources of geosmin were observed. Most geosmin was produced under anaerobic conditions in the hypolimnion in the autumn. A much smaller source of geosmin production was actinomycetes in the epilimnion. With the onset of the autumnal circulation of the water body, rapid aerobic degradation of geosmin was observed.     

Proteasome-dependent degradation of replisome components regulates faithful DNA replication

The replication machinery, or the replisome, collides with a variety of obstacles during the normal process of DNA replication. In addition to damaged template DNA, numerous chromosome regions are considered to be difficult to replicate owing to the presence of DNA secondary structures and DNA-binding proteins. Under these conditions, the replication fork stalls, generating replication stress. Stalled forks are prone to collapse, posing serious threats to genomic integrity. It is generally thought that the replication checkpoint functions to stabilize the replisome and replication fork structure upon replication stress. This is important in order to allow DNA replication to resume once the problem is solved. However, our recent studies demonstrated that some replisome components undergo proteasome-dependent degradation during DNA replication in the fission yeast Schizosaccharomyces pombe. Our investigation has revealed the involvement of the SCF^Pof3 (Skp1-Cullin/Cdc53-F-box) ubiquitin ligase in replisome regulation. We also demonstrated that forced accumulation of the replisome components leads to abnormal DNA replication upon replication stress. Here we review these findings and present additional data indicating the importance of replisome degradation for DNA replication. Our studies suggest that cells activate an alternative pathway to degrade replisome components in order to preserve genomic integrity.     

Interaction of Ddc1 and RPA with single-stranded/double-stranded DNA junctions in yeast whole cell extracts: Proteolytic degradation of the large subunit of replication protein A in ddc1Δ strains

To characterize proteins that interact with single-stranded/double-stranded (ss/ds) DNA junctions in whole cell free extracts of Saccharomyces cerevisiae, we used [³²P]-labeled photoreactive partial DNA duplexes containing a 3′-ss/ds-junction (3′-junction) or a 5′-ss/ds-junction (5′-junction). Identification of labeled proteins was achieved by MALDI-TOF mass spectrometry peptide mass fingerprinting and genetic analysis. In wild-type extract, one of the components of the Ddc1-Rad17-Mec3 complex, Ddc1, was found to be preferentially photocrosslinked at a 3′-junction. On the other hand, RPAp70, the large subunit of the replication protein A (RPA), was the predominant crosslinking product at a 5′-junction. Interestingly, ddc1Δ extracts did not display photocrosslinking of RPAp70 at a 5′-junction. The results show that RPAp70 crosslinked to DNA with a 5′-junction is subject to limited proteolysis in ddc1Δ extracts, whereas it is stable in WT, rad17Δ, mec3Δ and mec1Δ extracts. The degradation of the RPAp70-DNA adduct in ddc1Δ extract is strongly reduced in the presence of the proteasome inhibitor MG 132. We also addressed the question of the stability of free RPA, using anti-RPA antibodies. The results show that RPAp70 is also subject to proteolysis without photocrosslinking to DNA upon incubation in ddc1Δ extract. The data point to a novel property of Ddc1, modulating the turnover of DNA binding proteins such as RPAp70 by the proteasome.     

A survey for the Critically Endangered Liben Lark Heteromirafra archeri in Somaliland,north-western Somalia

The Critically Endangered Archer's Lark (now Liben Lark) Heteromirafra archeri was formerly considered to be endemic to north-western Somalia and known only from the Tog Wajaale Plain, where 18 specimens were collected between 1918 and 1922. Fifteen visits between 1970 and 2008 failed to relocate the species there, although popula- tions are now known from adjacent Ethiopia. We conducted three days of intensive surveys on the Tog Wajaale Plain in May 2010. Despite the three other lark species present being in full display, and H. archeri being recorded to have bred in early June, no Liben Larks were found. Vegetation structure surveys indicated that the plain has a taller and denser growth of grass than either of the other known localities for Liben Lark (the Liben and Jijiga Plains) making Tog Wajaale Plain seem superficially more suitable for the species, which prefers areas of taller grass elsewhere. However, previous large-scale agricultural activities may have altered the composition of grass species and precipitated the observed invasion of exotic weeds, notably Parthenium hysterophorus. Importantly, the Tog Wajaale Plain has a greater density of bushes than either the Liben or Jijiga Plains, possibly making ground-nesting birds more susceptible to predation by perch hunters.